Panomics Documentation
  • Overview
  • Projects
    • Project Structure
    • Project Visibility
    • Project Access
  • Samples
    • Sample Lifecycle
    • Sample Ingestion
    • Sample Metadata
  • Analyses
    • Create an Analysis
    • Delete an Analysis
    • Change Analysis Status
    • Publish an Analysis
    • View Analysis Audit Trail
    • Analysis Workbench
      • Quality Control
      • Gene Expression
      • Compute Statistics
      • Sample/Cell Explorer
        • Normalization
        • UMAP
      • Cell Composition
      • Marker Genes
      • Differential Gene Expression
      • Differential Pathway Activity
      • WGCNA
      • Gene Set Enrichment
    • Data Slices
  • OmicsBrowser
  • Gene Signature Similarity
  • Compute Runtimes
    • Codeless Compute
    • Code-based Compute
  • API Keys
  • Administration
    • Roles
    • Users
    • Ontologies
    • Metadata Fields
    • Collections
    • Gene Set Collections
    • Organization Settings
  • Release Notes
  • Technical Support
  • Legal
Powered by GitBook
On this page
  • Create gene expression tile
  • View existing gene expression tiles
  • Video demonstration
  1. Analyses
  2. Analysis Workbench

Gene Expression

PreviousQuality ControlNextCompute Statistics

Last updated 7 months ago

The gene expression module offers users a quick way to visualize expression without needing a runtime.

Create gene expression tile

To create a gene expression tile, click on the Add Gene Expression Tile button and fill in the form.

  • Subset (optional) Create a new data slice or select an existing one to visualize expression on a subset of your samples.

  • Gene Input (required) Manually input comma separate genes or select an existing gene list. The mean expression is used.

  • Group by (required) Select one or more observations to group your expression values.

  • Color by (optional) Color each data point with the observation selected.

  • Description (optional) Provide additional context for your team members.

View existing gene expression tiles

Gene expression tiles support sample stratification by z-score. Click on the View by Sample button to view the z-score for each gene in your tile, for each sample.

Video demonstration

Standard Compute
Add gene expression tile
View z-score by sample