> For the complete documentation index, see [llms.txt](https://documentation.panomics.bio/documentation/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://documentation.panomics.bio/documentation/analyses/analysis-workbench.md). # Analysis Workbench There are 3 analysis workflows available in Panomics, each offering appropriate analytical methods for the modality that's being analyzed. Workflows share a common structure, so the UI always stays familiar and intuitive. ## Workbench Structure

## Modules


	Quality Control	Visualize the samples that are part of your analysis.	qc.png	Quality Control
	Gene Expression	Rapidly plot gene expression without a runtime.	gex.png	Gene Expression
	Compute Statistics	Visualize relationships between genes and/or observations.	stats.png	Compute Statistics
Sample/Cell Explorer	Deep exploration of your dataset.		explorer.png	Sample/Cell Explorer
Cell Composition Analysis	Identify differences in cell composition between conditions.		cell_comp.png	Cell Composition
Marker Genes	Plot gene expression across groups or samples or cells.		marker_genes.png	Marker Genes
Differential Gene Expression	Run differential gene expression analysis.		diff_gene_exp.png	Differential Gene Expression
Differential Pathway Activity	Run differential pathway activity analysis.		diff_pathway_activity.png	Differential Pathway Activity
WGCNA	Run weighted gene co-expression network analysis.		wgcna.png	WGCNA
Gene Set Enrichment	Run gene set enrichment analysis.		gene_set_enrichment.png	Gene Set Enrichment

### Module availability by workflow

Module	Microarray	Bulk RNA-seq	Single cell RNA-seq
Quality Control	✅	✅	✅
Gene Expression	✅	✅	✅
Compute Statistics	✅	✅	✅
Sample/Cell Explorer	✅	✅	✅
Cell Composition	❌	❌	✅
Marker Genes	✅	✅	✅
Differential Gene Expression	✅	✅	✅
Differential Pathway Activity	✅	✅	✅
WGCNA	✅	✅	❌ (coming soon)
Gene Set Enrichment	✅	✅	✅

{% hint style="info" %} Within some modules, multiple bioinformatics actions can be taken. Visit each module to learn about all the options in detail. {% endhint %} ## Result Details Structure Some modules yield individualized results and each can be viewed in a details page. The result details page has a common structure across modules.

### Header * Back button - navigate to the results listing for the selected module * Result name * Edit button - inline editing of the result name * Info button - displays the parameters that were used to generate the result * Delete button - permanently deletes the result ### Main Content A number of tabs, each presenting data either as plots or as data grids.