# Analysis Workbench There are 3 analysis workflows available in Panomics, each offering appropriate analytical methods for the modality that's being analyzed. Workflows share a common structure, so the UI always stays familiar and intuitive. ## Workbench Structure

## Modules


	Quality Control	Visualize the samples that are part of your analysis.	/files/3fDdZhxGPpBXocmnGn53	/pages/T9CPs34yVWw17dsqywD1
	Gene Expression	Rapidly plot gene expression without a runtime.	/files/iGgw9oWiUb7gyGc9z3ES	/pages/wJ4yExoXCZyOwYGVqhvw
	Compute Statistics	Visualize relationships between genes and/or observations.	/files/tEC4WLBm7ZMUszAxTRBj	/pages/SBZCsWXLtpTZEmR9id66
Sample/Cell Explorer	Deep exploration of your dataset.		/files/3f4YHMY2DP8zidH72VOg	/pages/RGZFXgE4kFUVQbOE4Xxd
Cell Composition Analysis	Identify differences in cell composition between conditions.		/files/ygaKqF6YRYcryg2olTTJ	/pages/AGZxfYtjgNtZjIACXilB
Marker Genes	Plot gene expression across groups or samples or cells.		/files/OWGVAIF3QCqg0V9bLRdH	/pages/Jo5VsUUx5Z5Q0FhRuvXK
Differential Gene Expression	Run differential gene expression analysis.		/files/wHSV9Brq5P06Ltbl2phb	/pages/9juLK19hfHQaEQpiuZRv
Differential Pathway Activity	Run differential pathway activity analysis.		/files/4yw8jGjoud0L1h0jdyHV	/pages/24jFWf686zApQAVs48TC
WGCNA	Run weighted gene co-expression network analysis.		/files/9FnhdjyLpgTOfSGHnEHB	/pages/TS5hcKqOdwuZAVAXV5JI
Gene Set Enrichment	Run gene set enrichment analysis.		/files/0W3rywNmD7WlAnSydS5J	/pages/EySUKNQQ4MfRptuzwmB0

### Module availability by workflow

Module	Microarray	Bulk RNA-seq	Single cell RNA-seq
Quality Control	✅	✅	✅
Gene Expression	✅	✅	✅
Compute Statistics	✅	✅	✅
Sample/Cell Explorer	✅	✅	✅
Cell Composition	❌	❌	✅
Marker Genes	✅	✅	✅
Differential Gene Expression	✅	✅	✅
Differential Pathway Activity	✅	✅	✅
WGCNA	✅	✅	❌ (coming soon)
Gene Set Enrichment	✅	✅	✅

{% hint style="info" %} Within some modules, multiple bioinformatics actions can be taken. Visit each module to learn about all the options in detail. {% endhint %} ## Result Details Structure Some modules yield individualized results and each can be viewed in a details page. The result details page has a common structure across modules.

### Header * Back button - navigate to the results listing for the selected module * Result name * Edit button - inline editing of the result name * Info button - displays the parameters that were used to generate the result * Delete button - permanently deletes the result ### Main Content A number of tabs, each presenting data either as plots or as data grids. --- # Agent Instructions: Querying This Documentation If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question. Perform an HTTP GET request on the current page URL with the `ask` query parameter: ``` GET https://documentation.panomics.bio/documentation/analyses/analysis-workbench.md?ask= ``` The question should be specific, self-contained, and written in natural language. The response will contain a direct answer to the question and relevant excerpts and sources from the documentation. Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.