Sample/Cell Explorer

The Explorer modules enable the user to perform deep exploration of the dataset.

Sample/Cell Explorer

Available commands

Normalization

Normalize the expression data.

UMAP

Compute PCA, neighborhood graph, UMAP, and eliminate batch effects.

Clustering

Cluster the cells or samples.

Differential Gene Expression

Quickly run differential gene expression analysis between selected groups.

Pathway Activity Inference

Run pathway activity inference using the gene set collection of choice.

Differential Pathway Activity

Quickly run differential pathway activity analysis between selected groups.

Remove Cells/Samples

Delete cell or sample selections.

Filter Cells/Samples

Isolate cells or samples based on observations.

Plot Gene Expression

Plot gene expression values or scores.

Plot Pathway Activity

Plot pathway activity scores.

Annotate Cells/Samples

Quickly annotate selections

Segment Data

Create new observations based on other categorical observations.

Remove Observations

Delete unwanted observations.