# Sample/Cell Explorer The Explorer modules enable the user to perform deep exploration of the dataset.

## Available commands


	Normalization	Normalize the expression data.	/pages/2AfORWCn4SfJTDgrhs1m
	UMAP	Compute PCA, neighborhood graph, UMAP, and eliminate batch effects.	/pages/nlFmno1qr1CDzL9wh758
	Clustering	Cluster the cells or samples.
Differential Gene Expression	Quickly run differential gene expression analysis between selected groups.
Pathway Activity Inference	Run pathway activity inference using the gene set collection of choice.
Differential Pathway Activity	Quickly run differential pathway activity analysis between selected groups.
Remove Cells/Samples	Delete cell or sample selections.
Filter Cells/Samples	Isolate cells or samples based on observations.
Plot Gene Expression	Plot gene expression values or scores.
Plot Pathway Activity	Plot pathway activity scores.
Annotate Cells/Samples	Quickly annotate selections
Segment Data	Create new observations based on other categorical observations.
Remove Observations	Delete unwanted observations.

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