Panomics Documentation
  • Overview
  • Projects
    • Project Structure
    • Project Visibility
    • Project Access
  • Samples
    • Sample Lifecycle
    • Sample Ingestion
    • Sample Metadata
  • Analyses
    • Create an Analysis
    • Delete an Analysis
    • Change Analysis Status
    • Publish an Analysis
    • View Analysis Audit Trail
    • Analysis Workbench
      • Quality Control
      • Gene Expression
      • Compute Statistics
      • Sample/Cell Explorer
        • Normalization
        • UMAP
      • Cell Composition
      • Marker Genes
      • Differential Gene Expression
      • Differential Pathway Activity
      • WGCNA
      • Gene Set Enrichment
    • Data Slices
  • OmicsBrowser
  • Gene Signature Similarity
  • Compute Runtimes
    • Codeless Compute
    • Code-based Compute
  • API Keys
  • Administration
    • Roles
    • Users
    • Ontologies
    • Metadata Fields
    • Collections
    • Gene Set Collections
    • Organization Settings
  • Release Notes
  • Technical Support
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  1. Samples

Sample Lifecycle

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Last updated 7 months ago

Samples in Panomics have a predefined lifecycle.

Status
Description

DRAFT

This is the initial status for each sample that gets imported in Panomics. Samples stay in the DRAFT status until they are sent to the Standard Compute runtime for loading.

LOADING

Samples get processed by the Standard Compute runtime. During this time, the samples have the LOADING status.

ANNOTATING

This is a checkpoint status, meaning that transitioning away from ANNOTATING requires the "mark as ready" user action. While in this status, sample metadata can be applied either by uploading a file or by editing the metadata fields through the UI.

SAVING

When marked as ready, sample data is merged with the metadata via the Standard Compute runtime.

READY

Once the metadata is successfully merged with the sample data, samples transition to the READY state and can be used to create analyses. Ready samples can be transitioned back to the ANNOTATING state by users via the "mark as annotating" action.

FAILED

Any failure during the loading or saving processes transitions the sample to the FAILED status. Failed samples can only be deleted.

Sample lifecycle