Marker Genes
This module is similar to Gene Expression, in the sense that it is used for plotting gene expression while grouping by an observation. However, there are several distinctions.
Plots a heatmap and individual violin plots for each gene.
Does not compute pseudobulk for single-cell data.
Allows for grouping by any dataset observation, not just org-level metadata fields.
Requires a standard runtime.
A typical use case is plotting cell type marker genes across Leiden clusters to annotate cells.
Video demonstration
Last updated