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Marker Genes

PreviousCell CompositionNextDifferential Gene Expression

Last updated 6 months ago

This module is similar to , in the sense that it is used for plotting gene expression while grouping by an observation. However, there are several distinctions.

  1. Plots a heatmap and individual violin plots for each gene.

  2. Does not compute pseudobulk for single-cell data.

  3. Allows for grouping by any dataset observation, not just org-level metadata fields.

  4. Requires a .

A typical use case is plotting cell type marker genes across Leiden clusters to annotate cells.

Video demonstration

Gene Expression
standard runtime