Code-based Compute

Spin-up JupyterLab or RStudio runtimes to run custom bioinformatics analyses.

JupyterLab and RStudio runtimes enable users to perform custom analyses without leaving Panomics' secure environment. Assets generated using Standard Compute can be seamlessly copied to JupyterLab and RStudio from any project's Assets tab.

Spinning-up a JupyterLab runtime

Spin-up a JupyterLab runtime

Copying assets to and from a JupyterLab runtime

JupyterLab runtimes have a panomics folder that ensures communication with the Panomics platform. That folder is mounted in all projects, under the Assets tab.

Copying assets

Terminating a JupyterLab runtime

Before terminating a JupyterLab runtime, make sure to copy all desired files to your Project mount.

In order to terminate a JupyterLab runtime, the panomics folder must be empty. This ensures no accidental data loss can take place.

Terminate a JupyterLab runtime